The Charon's crew quarters are spread out over several decks. Deck 2 contains senior officer quarters, guest suites, two command suites, a Captain's suite, and two luxury diplomatic suites. Deck 3 contains more senior officer quarters and junior officer quarters. Deck 4 contains additional junior officer quarters and senior enlisted quarters, also comprising of several shared quarters. Deck 10 mainly consists of shared quarters and enlisted bunks, the marine barracks is also located on Deck 10.
Deck 2
- Quarters 201 (Captain's Quarters): Captain Shiarrael t`Rehu
- Quarters 202: Lieutenant Commander Sakarra Tyrax
- Quarters 203: Commander Dylan Marcus & Elizabeth Johnson (shared)
- Quarters 204: Commander David King
- Quarters 205: Commander Eithne Falcon & Commander Jade Falcon
Deck 3
- Quarters 301: Lieutenant Nathanial Doyle
- Quarters 302: Lieutenant Waqas Jilani
- Quarters 303: Lieutenant Nimue Andraste
- Quarters 305: Arrain M'Narth tr'Lhoell
- Quarters 308: Commander Robert Tisdale
- Quarters 309: Ambassador Ian Lamont
- Quarters 316: Arrain Aehlen tr'Kethry
Deck 4
- Quarters 404: JAG Miranda Xavier
- Quarters 406: Ensign Janel Sorad
- Quarters 407: EnArrain Rhiana t`Khellian
- Quarters 408: Lieutenant Rob Lansine
- Quarters 412: erie'Arrain Aerv t'Jaihen
- Quarters 413: Lieutenant JG Indira Bai
- Quarters 416: Warrant Officer Oberic Sierra
- Quarters 417: Lieutenant Suuraht
Deck 10
- Quarters 1001: Marine Captain Nikolai Chernienko
- Quarters 1002: 1st Lieutenant Brent Warren
- Quarters 1015: Lieutenant JG Auden Anderson
- Quarters 1018: Ensign Landon Neyes
- Quarters 1019: Ensign Nitka Zar
- Quarters 1020: SPC Shenn, PO3 Nils Olafsson
- Quarters 1022: Crewman Samantha Davis